stable
ODE-toolbox
Installation
Usage
Input
Output
Analytic solver generation
Numeric solver selection criteria
Internal representation
Working with large expressions
Examples
Caching of results
API documentation
Contributions and getting help
Citing ODE-toolbox
References
Acknowledgements
License
ode-toolbox
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Index
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Index
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A
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C
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D
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E
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F
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G
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I
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K
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M
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N
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_
__init__() (odetoolbox.analytic_integrator.AnalyticIntegrator method)
(odetoolbox.mixed_integrator.MixedIntegrator method)
(odetoolbox.shapes.Shape method)
(odetoolbox.stiffness.StiffnessTester method)
(odetoolbox.system_of_shapes.SystemOfShapes method)
__str__() (odetoolbox.shapes.Shape method)
_analysis() (in module odetoolbox)
_custom_simplify_expr() (in module odetoolbox.sympy_helpers)
_draw_decision() (odetoolbox.stiffness.StiffnessTester method)
_evaluate_integrator() (odetoolbox.stiffness.StiffnessTester method)
_filter_valid_conditions() (odetoolbox.singularity_detection.SingularityDetection static method)
_find_analytically_solvable_equations() (in module odetoolbox)
_find_in_matrix() (in module odetoolbox.sympy_helpers)
_find_variable_definition() (in module odetoolbox)
_flatten_conditions() (odetoolbox.singularity_detection.SingularityDetection static method)
_from_json_to_shapes() (in module odetoolbox)
_generate_homogeneous_poisson_spikes() (odetoolbox.spike_generator.SpikeGenerator class method)
_generate_regular_spikes() (odetoolbox.spike_generator.SpikeGenerator class method)
_generate_singularity_conditions() (odetoolbox.singularity_detection.SingularityDetection static method)
_get_all_first_order_variables() (in module odetoolbox)
_init_logging() (in module odetoolbox)
_is_matrix_defined_under_substitution() (odetoolbox.singularity_detection.SingularityDetection static method)
_is_sympy_type() (in module odetoolbox.sympy_helpers)
_is_zero() (in module odetoolbox.sympy_helpers)
_parse_defining_expression() (odetoolbox.shapes.Shape class method)
_print_Exp1() (odetoolbox.sympy_helpers.SympyPrinter method)
_print_Function() (odetoolbox.sympy_helpers.SympyPrinter method)
_read_global_config() (in module odetoolbox)
_sympy_autowrap_helpers (odetoolbox.shapes.Shape attribute)
_sympy_globals (odetoolbox.shapes.Shape attribute)
_update_step() (odetoolbox.analytic_integrator.AnalyticIntegrator method)
A
all_variable_symbols (odetoolbox.integrator.Integrator attribute)
analysis() (in module odetoolbox)
AnalyticIntegrator (class in odetoolbox.analytic_integrator)
C
check_stiffness() (odetoolbox.stiffness.StiffnessTester method)
Config (class in odetoolbox.config)
config (odetoolbox.config.Config attribute)
D
DependencyGraphPlotter (class in odetoolbox.dependency_graph_plotter)
disable_cache_update() (odetoolbox.analytic_integrator.AnalyticIntegrator method)
E
enable_cache_update() (odetoolbox.analytic_integrator.AnalyticIntegrator method)
F
find_singularities() (odetoolbox.singularity_detection.SingularityDetection static method)
from_function() (odetoolbox.shapes.Shape class method)
from_json() (odetoolbox.shapes.Shape class method)
from_ode() (odetoolbox.shapes.Shape class method)
from_shapes() (odetoolbox.system_of_shapes.SystemOfShapes class method)
G
generate_numeric_solver() (odetoolbox.system_of_shapes.SystemOfShapes method)
generate_propagator_solver() (odetoolbox.system_of_shapes.SystemOfShapes method)
get_all_variable_symbols() (odetoolbox.analytic_integrator.AnalyticIntegrator method)
(odetoolbox.shapes.Shape method)
get_connected_symbols() (odetoolbox.system_of_shapes.SystemOfShapes method)
get_dependency_edges() (odetoolbox.system_of_shapes.SystemOfShapes method)
get_initial_value() (odetoolbox.shapes.Shape method)
(odetoolbox.system_of_shapes.SystemOfShapes method)
get_jacobian_matrix() (odetoolbox.system_of_shapes.SystemOfShapes method)
get_lin_cc_symbols() (odetoolbox.system_of_shapes.SystemOfShapes method)
get_shape_by_symbol() (odetoolbox.system_of_shapes.SystemOfShapes method)
get_sorted_spike_times() (odetoolbox.integrator.Integrator method)
get_spike_times() (odetoolbox.integrator.Integrator method)
get_state_variables() (odetoolbox.shapes.Shape method)
get_sub_system() (odetoolbox.system_of_shapes.SystemOfShapes method)
get_value() (odetoolbox.analytic_integrator.AnalyticIntegrator method)
I
import_matplotlib() (in module odetoolbox.plot_helper)
integrate_ode() (odetoolbox.mixed_integrator.MixedIntegrator method)
Integrator (class in odetoolbox.integrator)
integrator_debug_plot() (odetoolbox.mixed_integrator.MixedIntegrator method)
is_constant_term() (in module odetoolbox.shapes)
is_homogeneous() (odetoolbox.shapes.Shape method)
is_lin_const_coeff() (odetoolbox.shapes.Shape method)
is_lin_const_coeff_in() (odetoolbox.shapes.Shape method)
K
keys() (odetoolbox.config.Config method)
M
MalformedInputException
MixedIntegrator (class in odetoolbox.mixed_integrator)
N
numerical_jacobian() (odetoolbox.mixed_integrator.MixedIntegrator method)
O
odetoolbox (module)
odetoolbox.analytic_integrator (module)
odetoolbox.config (module)
odetoolbox.dependency_graph_plotter (module)
odetoolbox.integrator (module)
odetoolbox.mixed_integrator (module)
odetoolbox.plot_helper (module)
odetoolbox.shapes (module)
odetoolbox.singularity_detection (module)
odetoolbox.spike_generator (module)
odetoolbox.stiffness (module)
odetoolbox.sympy_helpers (module)
odetoolbox.system_of_shapes (module)
off_diagonal_is_zero() (in module odetoolbox.system_of_shapes)
P
ParametersIncompleteException
plot_graph() (odetoolbox.dependency_graph_plotter.DependencyGraphPlotter class method)
propagate_lin_cc_judgements() (odetoolbox.system_of_shapes.SystemOfShapes method)
PropagatorGenerationException
R
random_seed (odetoolbox.stiffness.StiffnessTester attribute)
reconstitute_expr() (odetoolbox.shapes.Shape method)
(odetoolbox.system_of_shapes.SystemOfShapes method)
reset() (odetoolbox.analytic_integrator.AnalyticIntegrator method)
S
set_initial_values() (odetoolbox.analytic_integrator.AnalyticIntegrator method)
set_spike_times() (odetoolbox.integrator.Integrator method)
Shape (class in odetoolbox.shapes)
shape_order_from_system_matrix() (odetoolbox.system_of_shapes.SystemOfShapes method)
SingularityDetection (class in odetoolbox.singularity_detection)
spike_times_from_json() (odetoolbox.spike_generator.SpikeGenerator class method)
SpikeGenerator (class in odetoolbox.spike_generator)
split_lin_inhom_nonlin() (odetoolbox.shapes.Shape static method)
step() (odetoolbox.mixed_integrator.MixedIntegrator method)
StiffnessTester (class in odetoolbox.stiffness)
SympyPrinter (class in odetoolbox.sympy_helpers)
SystemOfShapes (class in odetoolbox.system_of_shapes)
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